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Symptom · 5 min read

Why Does My TDS Payable Balance Not Match What I Deposited? A Beginner's Three-Way Check

Check three records in order: the books, the challans and the filed return. Each gap between them points to a specific fix.

Terra Insight
Terra Insight Editorial Team Reconciliation Infrastructure

Content authored by practitioners with experience at Amazon India, Intuit QuickBooks, and the Tata Group. Meet the team →

Published 14 October 2026
Domain expertise
TDS Reconciliation GST Input Credit Platform Settlements NACH Batch Matching Bank Reconciliation Form 26AS Matching ERP Integrations Enterprise Finance Ops
Knowledge Card
Problem

The TDS Payable ledger shows a balance that never clears, and the accountant cannot tell whether the books, the challans or the return are wrong.

How It's Resolved

Compare three totals per quarter and per section or payment code: books, challans and the filed return. Each difference points to a cause.

Configuration

TDS Payable ledgers by section or payment code, a challan register with identifiers, and the filed return's deductee summary.

Output

Three totals that agree, with differences explained as not deposited, not reported or posted to the wrong head.

A TDS Payable balance that will not clear usually means one of three things: tax was deducted but not deposited, deposited under the wrong section or payment code, or deposited but not reported in the quarterly return. Check the books, then the challans, then the return, in that order.

Likely causes, by symptom

Ledger symptomLikely causeRecord to checkFix
Balance left after the monthly depositSome deductions not depositedLedger vs challans for that monthDeposit the shortfall with interest
Deposit larger than the ledgerInterest or fee in the same challan; double posting; deduction reversed in booksChallan breakdownSplit interest to its own ledger; reverse duplicates
One section’s ledger over, another underChallan paid under the wrong section or codeNature of payment on the challanChallan correction
Return total lower than ledger and challansDeductions not reportedReturn deductee detailsCorrection return

The three records and what each should show

For each quarter, and each section or payment code:

  1. Books: total credited to TDS Payable.
  2. Challans: total deposited, with BSR code, date and serial number for each.
  3. Filed return: total TDS reported against deductee PANs.

All three should agree. Differences between books and challans are a deposit problem. Differences between challans and the return are a reporting problem.

Worked example

For the quarter:

RecordTotal
Books (TDS Payable credited)₹1,24,000
Challans deposited₹1,20,000
Return (reported)₹1,18,000
  • Books minus challans = ₹4,000 not deposited. Say it is TDS on a June bill booked late. Deposit it now, with interest at 1.5 percent a month or part of a month from the date of deduction under the 1961 Act’s Section 201(1A).
  • Challans minus return = ₹2,000 not reported. Say one vendor had no PAN in the master and was left out of the return. Add the deductee in a correction return so the vendor gets the credit.

After both fixes, all three records show ₹1,24,000. Doing the same check section by section, for example ₹80,000 under 194C and ₹44,000 under 194J, shows exactly which ledger holds the gap.

How often should you run the check?

Twice:

  1. After each monthly deposit, by the 7th: ledger versus challans for that month. Catches the ₹4,000 type gap within weeks.
  2. Before filing the quarterly return: challans versus the return draft. Catches the ₹2,000 type gap before it is filed.

Running it only at year end means interest has been building for months and vendors are already asking about missing credits.

TransactIG reconciles TDS across books, challans and returns, with gaps shown in an exception queue and audit-ready exports. See TDS reconciliation software and reconciliation software for India.

Primary reference: TRACES — where deductors see how their challans have been consumed by filed returns and any default arising..

Frequently Asked Questions

Why is there a balance left in TDS Payable after I deposited?
Usually some deductions were not deposited, or the deposit was made under a different section or payment code and posted to a different ledger.
Why is my challan total higher than the ledger?
Often interest or late fee was paid in the same challan, a deposit was posted twice, or a deduction was reversed in the books after payment.
Why is my return total lower than the ledger?
Some deductions were not reported in the return, often because a vendor's PAN was missing or the entry was added after the return was prepared.
How often should I run this check?
After each monthly deposit by the 7th, and again before the quarterly return is filed.
Do I need to file a correction return?
If deductions were missed or mis-reported in a filed return, yes. A correction return fixes it and lets the vendor's credit appear.

See how TransactIG handles reconciliation for your industry

Configuration takes 2–4 weeks. No code development required. ISO 27001:2022 certified.