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Symptom · 6 min read

The Vendor Says We Owe More Than Our Ledger Shows: Why Balances Differ and What to Check

Most gaps between a vendor's statement and your ledger come from a few causes: unbooked invoices, payments not yet credited, credit or debit notes on one side, TDS not reflected, advances and disputes.

Terra Insight
Terra Insight Editorial Team Reconciliation Infrastructure

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Published 14 October 2026
Domain expertise
TDS Reconciliation GST Input Credit Platform Settlements NACH Batch Matching Bank Reconciliation Form 26AS Matching ERP Integrations Enterprise Finance Ops
Knowledge Card
Problem

A supplier's statement shows a higher balance than the ledger, and the supplier is chasing payment of an amount the accountant cannot explain.

How It's Resolved

Split the gap into items recorded on only one side: invoices not booked, payments not credited, one-sided credit or debit notes, TDS not reflected, unadjusted advances and disputed items. Each must be backed by a document.

Configuration

A request for the vendor's statement of account and invoice list, a line-by-line comparison, and a register of disputed items with owners.

Output

The full gap explained, missing entries booked on the correct side, and only genuinely disputed amounts held back.

Most gaps between a vendor’s statement and your ledger come from a short list of causes: invoices received but not booked, payments made but not yet credited by the vendor, credit or debit notes on one side only, TDS deducted but not reflected, advances not adjusted, and disputed rates or quantities. Split the gap into these pieces and it usually disappears.

What are the likely causes, and what fixes each?

CauseWhich side lacks the entryDocument to ask for or checkEntry or action
Invoice received late or not bookedYour booksInvoice copy, GRN, e-way billBook the invoice in the correct month
Payment not yet credited by vendorVendor’s booksYour bank statement, UTRSend the UTR; no entry on your side
Credit note issued by vendor, not booked by youYour booksCredit note copyBook the credit note
Debit note raised by you, not accepted by vendorVendor’s booksYour debit note, reasonAsk the vendor to accept and issue a credit note
TDS deducted, not booked by vendorVendor’s booksTDS challan, TDS certificateAsk the vendor to check their TDS credit statement
Advance not adjustedEither sideAdvance payment record, billAllocate the advance against the bill
Rate or quantity disputeNeither, until agreedPO, GRN, contractEscalate to purchase team; record as disputed

A worked example: a ₹1,12,000 gap

On 30 September your ledger shows ₹4,00,000 payable to a raw material supplier. The supplier’s statement shows ₹5,12,000. The gap is ₹1,12,000.

Matching line by line, you find three items:

  1. Invoice of ₹59,000 dated 30 September, received and booked by you on 3 October. It is in the supplier’s September statement but in your October books.
  2. Payment of ₹48,000 sent on 29 September by NEFT. The supplier booked it on 1 October, so its September statement still shows the amount as due. Your books already show it as paid.
  3. TDS of ₹5,000 you deducted on an earlier service bill. You reduced the supplier’s balance; the supplier has not yet booked the TDS.
ItemAmount
Balance per our books₹4,00,000
Add: invoice dated 30 September, booked by us in October₹59,000
Add: payment sent 29 September, credited by vendor 1 October₹48,000
Add: TDS deducted by us, not yet booked by vendor₹5,000
Balance per vendor’s statement₹5,12,000

Check: ₹59,000 + ₹48,000 + ₹5,000 = ₹1,12,000, and ₹4,00,000 + ₹1,12,000 = ₹5,12,000.

Only the first item needs an entry on your side: the ₹59,000 invoice belongs in September if the goods were received in September. The second is a timing difference that will clear on its own. The third needs the supplier to book the TDS, which it can confirm in its TDS credit statement (Form 26AS, or Form 168 from tax year 2026-27).

What if the vendor’s list shows an invoice you never received?

Do not book it on the vendor’s word alone. Ask for:

  1. A copy of the tax invoice.
  2. Proof of delivery, such as a signed delivery challan or courier receipt.
  3. The e-way bill number, where the goods required one.

Then check your GRN register. If the goods were received but the invoice was lost, book it. If the goods never arrived, tell the vendor in writing. Remember that under Section 16(2) of the CGST Act, 2017, you can claim input tax credit only on goods or services you have actually received.

Should you pay the undisputed part while the rest is checked?

Usually, yes. In the example, the payment and TDS items are not disputes at all, and the ₹59,000 invoice is valid. If a rate dispute does exist on one invoice, pay everything else and hold only that amount, with a note to the supplier explaining why.

This matters most for registered micro and small suppliers. Under the MSMED Act, 2006, payment is due within the agreed period, which cannot exceed 45 days. Holding an entire balance over one disputed invoice can push the rest past that limit.

Primary reference: Income Tax Department e-filing portal — where the supplier can see TDS you deducted and deposited in their TDS credit statement, which resolves most TDS-related gaps..

Frequently Asked Questions

Why does the vendor show a higher balance than my books?
Usually because the vendor has recorded something you have not, such as an invoice still in transit, or you have recorded something the vendor has not, such as a payment or TDS.
What if the vendor shows an invoice I never received?
Ask for a copy, the delivery proof and the e-way bill or GRN reference. Do not book it until you can confirm the goods or services were received.
Should I pay the undisputed part?
Usually yes. Paying the agreed amount keeps the relationship and your MSME obligations on track while the disputed part is checked.
How does TDS cause a difference?
You reduce the supplier's balance by the TDS you deduct. If the supplier has not yet booked that TDS, its statement shows the full amount as still due.
How often should I compare vendor statements?
Monthly for large suppliers and those registered as micro or small enterprises, quarterly for others, and always at year end.

See how TransactIG handles reconciliation for your industry

Configuration takes 2–4 weeks. No code development required. ISO 27001:2022 certified.